1989 You Can't Do That on Stage Anymore, Vol. 3
1991 The Best Band You Never Heard in Your Life
Make a Jazz Noise Here
You Can't Do That on Stage Anymore, Vol. 4
1992 You Can't Do That on Stage Anymore, Vol. 5
You Can't Do That on Stage Anymore, Vol. 6
Playground Psychotics
1993 Ahead of Their Time
The Yellow Shark
Posthumous albums
1994 Civilization Phaze III
1996 The Lost Episodes
Läther
Frank Zappa Plays the Music of Frank Zappa: A Memorial Tribute
1997 Have I Offended Someone?
1998 Mystery Disc
1999 Everything Is Healing Nicely
2002 FZ:OZ
2003 Halloween
2004 Joe's Corsage
Joe's Domage
QuAUDIOPHILIAc
2005 Joe's XMASage
2006 Imaginary Diseases
The MOFO Project/Object (2-CD set)
The MOFO Project/Object (4-CD set)
Trance-Fusion