1990 Wrong Way Up (w/ John Cale, remastered with bonus tracks in 2005)
1995 Spinner (w/ Jah Wobble) Original Soundtracks 1 (w/ U2
1997 Tracks and Traces (w/ Harmonia, Previously unreleased September 1976 sessions listed as Harmonia & Eno '76 or Harmonia '76
2000 Music for Onmyo-Ji (w/ J. Peter Schwalm, only in Japan)
2001 Drawn from Life (w/ J. Peter Schwalm)
All Saints (David Bowie compilation album of unreleased instrumental outtakes, including collaborations with Eno)
2004 The Equatorial Stars (w/ Robert Fripp)
2007 Beyond Even (a.k.a. The Cotswold Gnomes) (w/ Robert Fripp)
2008 Everything That Happens Will Happen Today (w/ David Byrne)
2010 Small Craft on a Milk Sea (w/ Leo Abrahams and Jon Hopkins)
2011 Drums Between the Bells (w/ Rick Holland, spoken word) Panic of Looking (w/ Rick Holland, spoken word)
2014 Someday World (w/ Karl Hyde) High Life (w/ Karl Hyde)